Info • Colletotrichum falcatum MAFF306170 v1.0


[Jan 2015] The Colletotrichum falcatum genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Colletotrichum falcatum MAFF306170 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 49.09
Sequencing read coverage depth 141.7x
# of contigs 1454
# of scaffolds 1162
# of scaffolds >= 2Kbp 1025
Scaffold N50 158
Scaffold L50 (Mbp) 0.09
# of gaps 292
% of scaffold length in gaps 0.4%
Three largest Scaffolds (Mbp) 0.44, 0.39, 0.36

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 47962 47143 98.3%

Gene Models FilteredModels1
length (bp) of: average median
gene 1590 1330
transcript 1444 1184
exon 563 364
intron 95 68
protein length (aa) 397 309
exons per gene 2.56 2
# of gene models 15619


Jo Anne Crouch, Ph.D., USDA-ARS, Beltsville, MD


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.