Status
This genome was sequenced by the Broad Institute. Please check their data use policies.
Summary statistics for the Colletotrichum higginsianum IMI
349063 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 49.08 |
| Sequencing read coverage depth | |
| # of contigs | 10235 |
| # of scaffolds | 10235 |
| # of scaffolds >= 2Kbp | 8407 |
| Scaffold N50 | 2404 |
| Scaffold L50 (Mbp) | 0.01 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.05, 0.04, 0.03 |
| Gene Models | BroadModels | |
| length (bp) of: | average | median |
| gene | 1220 | 1020 |
| transcript | 1095 | 894 |
| exon | 448 | 258 |
| intron | 89 | 69 |
| description: | ||
| protein length (aa) | 365 | 298 |
| exons per gene | 2.44 | 2 |
| # of gene models | 16172 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
O'Connell RJ, Thon MR, Hacquard S, Amyotte SG, Kleemann J, Torres MF, Damm U, Buiate EA, Epstein L, Alkan N, Altmüller J, Alvarado-Balderrama L, Bauser CA, Becker C, Birren BW, Chen Z, Choi J, Crouch JA, Duvick JP, Farman MA, Gan P, Heiman D, Henrissat B, Howard RJ, Kabbage M, Koch C, Kracher B, Kubo Y, Law AD, Lebrun MH, Lee YH, Miyara I, Moore N, Neumann U, Nordström K, Panaccione DG, Panstruga R, Place M, Proctor RH, Prusky D, Rech G, Reinhardt R, Rollins JA, Rounsley S, Schardl CL, Schwartz DC, Shenoy N, Shirasu K, Sikhakolli UR, Stüber K, Sukno SA, Sweigard JA, Takano Y, Takahara H, Trail F, van der Does HC, Voll LM, Will I, Young S, Zeng Q, Zhang J, Zhou S, Dickman MB, Schulze-Lefert P, Ver Loren van Themaat E, Ma LJ, Vaillancourt LJ
Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses.
Nat Genet. 2012 Sep;44(9):1060-5. doi: 10.1038/ng.2372
O'Connell RJ, Thon MR, Hacquard S, Amyotte SG, Kleemann J, Torres MF, Damm U, Buiate EA, Epstein L, Alkan N, Altmüller J, Alvarado-Balderrama L, Bauser CA, Becker C, Birren BW, Chen Z, Choi J, Crouch JA, Duvick JP, Farman MA, Gan P, Heiman D, Henrissat B, Howard RJ, Kabbage M, Koch C, Kracher B, Kubo Y, Law AD, Lebrun MH, Lee YH, Miyara I, Moore N, Neumann U, Nordström K, Panaccione DG, Panstruga R, Place M, Proctor RH, Prusky D, Rech G, Reinhardt R, Rollins JA, Rounsley S, Schardl CL, Schwartz DC, Shenoy N, Shirasu K, Sikhakolli UR, Stüber K, Sukno SA, Sweigard JA, Takano Y, Takahara H, Trail F, van der Does HC, Voll LM, Will I, Young S, Zeng Q, Zhang J, Zhou S, Dickman MB, Schulze-Lefert P, Ver Loren van Themaat E, Ma LJ, Vaillancourt LJ
Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses.
Nat Genet. 2012 Sep;44(9):1060-5. doi: 10.1038/ng.2372
Funding
This project was not sequenced at the JGI.
