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Info • Coniochaeta ligniaria R110-5 v1.0

Status

[June 2021] [May 2021] The Coniochaeta ligniaria R110-5 genome was sequenced with Illumina NovaSEQ6000 platform, assembled with MEGAHIT v1.2.9, binned using METABAT version 2.12.1, and annotated with the JGI Annotation Pipeline.

Summary statistics for the Coniochaeta ligniaria R110-5 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.10
Sequencing read coverage depth 3.68x
# of contigs 475
# of scaffolds 475
# of scaffolds >= 2Kbp 475
Scaffold N50 71
Scaffold L50 (Mbp) 0.12
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.73, 0.73, 0.61


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTClusters 6641 6470 97.4%
Ests est.fasta 289858 269019 92.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1714 1433
transcript 1519 1266
exon 537 303
intron 108 66
description:
protein length (aa) 496 412
exons per gene 2.83 2
# of gene models 10509


Collaborators

Mike Wilkins - Colorado State University

Funding

This project was not sequenced at the JGI.