Info • Coniochaeta ligniaria R110-5 v1.0

Status

[June 2021] [May 2021] The Coniochaeta ligniaria R110-5 genome was sequenced with Illumina NovaSEQ6000 platform, assembled with MEGAHIT v1.2.9, binned using METABAT version 2.12.1, and annotated with the JGI Annotation Pipeline.

Summary statistics for the Coniochaeta ligniaria R110-5 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.10
Sequencing read coverage depth 3.68x
# of contigs 475
# of scaffolds 475
# of scaffolds >= 2Kbp 475
Scaffold N50 71
Scaffold L50 (Mbp) 0.12
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.73, 0.73, 0.61


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTClusters 6641 6470 97.4%
Ests est.fasta 289858 269019 92.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1714 1433
transcript 1519 1266
exon 537 303
intron 108 66
description:
protein length (aa) 496 412
exons per gene 2.83 2
# of gene models 10509


Collaborators

Mike Wilkins - Colorado State University

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Nelson AR, Narrowe AB, Rhoades CC, Fegel TS, Daly RA, Roth HK, Chu RK, Amundson KK, Young RB, Steindorff AS, Mondo SJ, Grigoriev IV, Salamov A, Borch T, Wilkins MJ
Wildfire-dependent changes in soil microbiome diversity and function.
Nat Microbiol. 2022 Aug 25;():. doi: 10.1038/s41564-022-01203-y

Funding

This project was not sequenced at the JGI.