Info • Colletotrichum sublineola CBS 131301 v1.0

Status

[Jan 2015] The Colletotrichum sublineola genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Colletotrichum sublineola CBS 131301 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 46.92
Sequencing read coverage depth 146x
# of contigs 1547
# of scaffolds 1434
# of scaffolds >= 2Kbp 1216
Scaffold N50 155
Scaffold L50 (Mbp) 0.08
# of gaps 113
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.74, 0.45, 0.37


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 43421 42856 98.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1620 1377
transcript 1471 1228
exon 571 370
intron 96 66
description:
protein length (aa) 410 328
exons per gene 2.58 2
# of gene models 15208


Collaborators

Jo Anne Crouch, Ph.D., USDA-ARS, Beltsville, MD

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.