Info • Colletotrichum zoysiae MAFF238573 v1.0

Status

[Jan 2015] The Colletotrichum zoysiae genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Colletotrichum zoysiae MAFF238573 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 46.53
Sequencing read coverage depth 102.8x
# of contigs 722
# of scaffolds 617
# of scaffolds >= 2Kbp 527
Scaffold N50 80
Scaffold L50 (Mbp) 0.18
# of gaps 105
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.77, 0.62, 0.55


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 42218 41874 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1645 1405
transcript 1491 1251
exon 559 360
intron 94 67
description:
protein length (aa) 414 333
exons per gene 2.67 2
# of gene models 15326


Collaborators

Jo Anne Crouch, Ph.D., USDA-ARS, Beltsville, MD

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.