Info • Coprinellus angulatus CBS 144469 v1.0


[May 2018] The Coprinellus angulatus genome was sequenced using PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Coprinellus angulatus is likely a polymorphic dikaryon, and this is reflected in an assembly and annotation with significant separation of alleles. 327 of the 517 scaffolds are very similar to larger scaffolds and are predicted to constitute an alternate or secondary haplotype. To represent these primary and secondary haplotypes in the Portal, we have created 'primary alleles' and 'secondary alleles' gene model tracks, comprising the models found on each haplotype. The goal of the GeneCatalog (GC) is to produce a non-redundant set of models which captures the full functional repertoire of the genome, and so the few secondary alleles that are unique were included in the GC, while all others were not.

Summary statistics for the Coprinellus angulatus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 93.57
Sequencing read coverage depth 63.55x
# of contigs 517
# of scaffolds 517
# of scaffolds >= 2Kbp 509
Scaffold N50 56
Scaffold L50 (Mbp) 0.48
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.23, 1.88, 1.80

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 63087 59183 93.8%
Ests est.fasta 114140244 113252675 99.2%

Gene Models FilteredModels1
length (bp) of: average median
gene 1769 1518
transcript 1432 1212
exon 264 158
intron 78 59
protein length (aa) 425 347
exons per gene 5.43 4
# of gene models 25937


  • Tom Bruns at University of California Berkeley

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.