Info • Coprinopsis cinerea AmutBmut pab1-1 v1.0


[May 2013] The Coprinopsis cinerea AmutBmut pab1-1 genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R42328 (Gnerre et al., 2010).

Summary statistics for the Coprinopsis cinerea AmutBmut pab1-1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.12
Sequencing read coverage depth 141.2x
# of contigs 1053
# of scaffolds 944
# of scaffolds >= 2Kbp 759
Scaffold N50 89
Scaffold L50 (Mbp) 0.10
# of gaps 109
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.62, 0.61, 0.57

ESTs Data set # sequences total # mapped to genome % mapped to genome
Other RNASeq assemblies 55884 51455 92.1%

Gene Models FilteredModels1
length (bp) of: average median
gene 1748 1482
transcript 1435 1194
exon 265 157
intron 73 58
protein length (aa) 433 351
exons per gene 5.41 4
# of gene models 14245


Patricia Pukkila, UNC Department of Biology, USA

Genome Reference(s)



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.