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Info • Coprinellus micaceus FP101781 v2.0

Status

(Oct 2015) The Coprinellus micaceus FP101781 genome was sequenced using PacBio and assembled with Falcon version 20140820, improved with finisherSC, and polished with Quiver.

The JGI annotation pipeline identified 4,948 gene models as possible diploid alleles, and removed them from the filtered model set. The removed models are shown in the track "FM1_removed_alleles", and are available from the download page.

Summary statistics for the Coprinellus micaceus v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 77.39
Sequencing read coverage depth 74.8x
# of contigs 704
# of scaffolds 704
# of scaffolds >= 2Kbp 703
Scaffold N50 55
Scaffold L50 (Mbp) 0.32
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.25, 2.14, 2.07


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 49465 47831 96.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1619 1344
transcript 1330 1083
exon 274 167
intron 77 59
description:
protein length (aa) 384 303
exons per gene 4.85 4
# of gene models 23559


Collaborators

Joseph Spatafora, Oregon State University

Laszlo Nagy, Clark University

Genome Reference(s)

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.