Due to a planned NERSC power outage, JGI portals will be unavailable 6:00am PDT July 10 - 11:59pm PDT July 14. System Status updates available here.
Info • Corynespora cassiicola CCP v1.0


June 2014. The genome of Corynespora cassiicola was sequenced using Illumina technology and assembled using AllPathsLG release version R47710 (Gnerre et al., 2011).

Summary statistics for the Corynespora cassiicola CCP v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 44.85
Sequencing read coverage depth 58.8x
# of contigs 500
# of scaffolds 244
# of scaffolds >= 2Kbp 173
Scaffold N50 8
Scaffold L50 (Mbp) 2.51
# of gaps 256
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 4.76, 2.92, 2.67

ESTs Data set # sequences total # mapped to genome % mapped to genome
Other Assembled_RNAseq_reads 35066 34523 98.5%

Gene Models FilteredModels1
length (bp) of: average median
gene 1610 1385
transcript 1480 1270
exon 570 372
intron 84 56
protein length (aa) 421 347
exons per gene 2.60 2
# of gene models 17166


  • Francis Martin (INRA, France)
  • Valérie Pujade-Renaud (CIRAD, France)
  • Joey Spatafora (Oregon State University, USA)

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.