Info • Cryptococcus curvatus ATCC 20509 v1.0

Status

[Aug 2015] The Cryptococcus curvatus ATCC 20509 genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Cryptococcus curvatus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 19.91
Sequencing read coverage depth 87.8x
# of contigs 73
# of scaffolds 16
# of scaffolds >= 2Kbp 14
Scaffold N50 3
Scaffold L50 (Mbp) 2.51
# of gaps 57
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 5.25, 4.14, 2.51


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 26951 26120 96.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1740 1494
transcript 1555 1305
exon 422 241
intron 71 41
description:
protein length (aa) 449 362
exons per gene 3.69 3
# of gene models 8661


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.