Info • Cryptodiaporthe sp. AZ0812 v1.0


[November 2017] The Cryptodiaporthe sp. AZ0812 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Cryptodiaporthe sp. AZ0812 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 41.66
Sequencing read coverage depth 36.3x
# of contigs 76
# of scaffolds 76
# of scaffolds >= 2Kbp 76
Scaffold N50 9
Scaffold L50 (Mbp) 2.01
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.88, 2.84, 2.54

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 36843 36288 98.5%
Ests est.fasta 117294570 116765062 99.5%

Gene Models FilteredModels1
length (bp) of: average median
gene 1892 1679
transcript 1717 1512
exon 599 381
intron 96 72
protein length (aa) 483 410
exons per gene 2.87 2
# of gene models 12727


Jana U'Ren, University of Arizona, AZ

Betsy Arnold, University of Arizona, AZ


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.