Info • Cyberlindnera jadinii NRRL Y-1542 v1.0


The Cyberlindnera jadinii NRRL Y-1542 genome was sequenced using the Illumina platform and assembled with AllPathsLG.  The genome was annotated using the JGI annotation pipeline and custom analyses.

Summary statistics for the Cyberlindnera jadinii NRRL Y-1542 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 13.02
Sequencing read coverage depth 109.5
# of contigs 392
# of scaffolds 76
# of scaffolds >= 2Kbp 56
Scaffold N50 6
Scaffold L50 (Mbp) 0.70
# of gaps 316
% of scaffold length in gaps 2.0%
Three largest Scaffolds (Mbp) 1.92, 1.29, 1.17

ESTs Data set # sequences total # mapped to genome % mapped to genome
Other RNAseq_contigs 15564 13428 86.3%

Gene Models FilteredModels1
length (bp) of: average median
gene 1510 1274
transcript 1452 1243
exon 1079 900
intron 168 68
protein length (aa) 433 364
exons per gene 1.35 1
# of gene models 6038


Thomas Jeffries, University of Wisconsin

Igor Grigoriev, DOE Joint Genome Institute

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.