Status
The Cyberlindnera jadinii NRRL Y-1542 genome was sequenced using the Illumina platform and assembled with AllPathsLG. The genome was annotated using the JGI annotation pipeline and custom analyses.
Summary statistics for the Cyberlindnera jadinii NRRL
Y-1542 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 13.02 |
| Sequencing read coverage depth | 109.5 |
| # of contigs | 392 |
| # of scaffolds | 76 |
| # of scaffolds >= 2Kbp | 56 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 0.70 |
| # of gaps | 316 |
| % of scaffold length in gaps | 2.0% |
| Three largest Scaffolds (Mbp) | 1.92, 1.29, 1.17 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | RNAseq_contigs | 15564 | 13428 | 86.3% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1510 | 1274 |
| transcript | 1452 | 1243 |
| exon | 1079 | 900 |
| intron | 168 | 68 |
| description: | ||
| protein length (aa) | 433 | 364 |
| exons per gene | 1.35 | 1 |
| # of gene models | 6038 |
Collaborators
Thomas Jeffries, University of Wisconsin
Igor Grigoriev, DOE Joint Genome Institute
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Riley R, Haridas S, Wolfe KH, Lopes MR, Hittinger CT, Göker M, Salamov AA, Wisecaver JH, Long TM, Calvey CH, Aerts AL, Barry KW, Choi C, Clum A, Coughlan AY, Deshpande S, Douglass AP, Hanson SJ, Klenk HP, LaButti KM, Lapidus A, Lindquist EA, Lipzen AM, Meier-Kolthoff JP, Ohm RA, Otillar RP, Pangilinan JL, Peng Y, Rokas A, Rosa CA, Scheuner C, Sibirny AA, Slot JC, Stielow JB, Sun H, Kurtzman CP, Blackwell M, Grigoriev IV, Jeffries TW
Comparative genomics of biotechnologically important yeasts.
Proc Natl Acad Sci U S A. 2016 Aug 30;113(35):9882-7. doi: 10.1073/pnas.1603941113
Riley R, Haridas S, Wolfe KH, Lopes MR, Hittinger CT, Göker M, Salamov AA, Wisecaver JH, Long TM, Calvey CH, Aerts AL, Barry KW, Choi C, Clum A, Coughlan AY, Deshpande S, Douglass AP, Hanson SJ, Klenk HP, LaButti KM, Lapidus A, Lindquist EA, Lipzen AM, Meier-Kolthoff JP, Ohm RA, Otillar RP, Pangilinan JL, Peng Y, Rokas A, Rosa CA, Scheuner C, Sibirny AA, Slot JC, Stielow JB, Sun H, Kurtzman CP, Blackwell M, Grigoriev IV, Jeffries TW
Comparative genomics of biotechnologically important yeasts.
Proc Natl Acad Sci U S A. 2016 Aug 30;113(35):9882-7. doi: 10.1073/pnas.1603941113
Links
Thomas Jeffries laboratory, University of Wisconsin
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
