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Info • Dacryonaema rufum OMC1653 v1.0

Status

[January 2019] The Dacryonaema rufum OMC1653 genome was sequenced with PacBio, assembled with Falcon (v1.8.8), and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the Download section.

Summary statistics for the Dacryonaema rufum OMC1653 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 53.92
Sequencing read coverage depth 131.47x
# of contigs 62
# of scaffolds 62
# of scaffolds >= 2Kbp 61
Scaffold N50 11
Scaffold L50 (Mbp) 1.91
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.08, 2.88, 2.84


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 112062 108086 96.5%
Ests est.fasta 178523305 176624875 98.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1776 1527
transcript 1458 1245
exon 243 146
intron 66 56
description:
protein length (aa) 418 335
exons per gene 5.99 5
# of gene models 15355


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.