Info • Debaryomyces subglobosus dep8 v1.0


[February 2021] The Debaryomyces subglobosus dep8 genome was not sequenced by the JGI. The assembly was provided by Eric Young and it was annotated using the JGI Fungal Annotation Pipeline. The transcriptome was sequenced with Illumina at the JGI and assembled using Trinity.

Summary statistics for the Debaryomyces subglobosus dep8 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 11.84
Sequencing read coverage depth
# of contigs 13
# of scaffolds 13
# of scaffolds >= 2Kbp 12
Scaffold N50 3
Scaffold L50 (Mbp) 2.00
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.28, 2.20, 2.00

Please note RNA data suffers from contamination. Zero accuracy/unmapped contigs are BLASTing to Komagataella pastoris
ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 424138595 415531950 98.0%
Other Trinity_assembled_Illumina_transcriptome 24533 8588 35.0%

Gene Models FilteredModels1
length (bp) of: average median
gene 1740 1502
transcript 1714 1485
exon 1383 1196
intron 108 59
protein length (aa) 500 420
exons per gene 1.24 1
# of gene models 5831


  • Eric Young, Worchester Polytechnic Institute, Worchester, MA


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.