Info • Decorospora gaudefroyi v1.0

Status

[May 2015] The Decorospora gaudefroyi genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2011).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Decorospora gaudefroyi v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 30.56
Sequencing read coverage depth 152.6x
# of contigs 879
# of scaffolds 699
# of scaffolds >= 2Kbp 534
Scaffold N50 70
Scaffold L50 (Mbp) 0.15
# of gaps 180
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 0.66, 0.58, 0.45


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 26355 25514 96.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1716 1482
transcript 1586 1353
exon 610 387
intron 84 58
description:
protein length (aa) 446 361
exons per gene 2.60 2
# of gene models 11835


Collaborators

Joseph Spatafora, Oregon State University, USA
Patrik Inderbitzin, University of California, Davis, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.