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Info • Dekkera bruxellensis CBS 2499 v2.0

Status

(June 2012) This draft release was produced using Illumina data (2x76 300bp, 2x150 270bp, 2x100 4kb CLIP) and 15kb shredded data from a Newbler assembly and was assembled using the AllPathsLG assembler.

Summary statistics for the Dekkera bruxellensis CBS 2499 v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 13.39
Sequencing read coverage depth 127.5x
# of contigs 908
# of scaffolds 84
# of scaffolds >= 2Kbp 45
Scaffold N50 3
Scaffold L50 (Mbp) 1.79
# of gaps 824
% of scaffold length in gaps 4.4%
Three largest Scaffolds (Mbp) 2.88, 2.05, 1.79


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other RNAseq_assemblies 9759 8386 85.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1525 1251
transcript 1429 1203
exon 1051 849
intron 271 104
description:
protein length (aa) 440 365
exons per gene 1.36 1
# of gene models 5636


Collaborators

Trevor Phister, Ph.D., North Carolina State University

Genome Reference(s)

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.