Info • Dentipellis sp. KUC8613 v1.0

Status

In Aug 2015, the Dentipellis sp. KUC8613 genome was sequenced using the Illumina platform and subsequently assembled with AllPathsLG release version R44008. The genome was annotated with the JGI annotation pipeline and custom analyses.

 

Summary statistics for the Dentipellis sp. KUC8613 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.71
Sequencing read coverage depth 88.6x
# of contigs 1184
# of scaffolds 425
# of scaffolds >= 2Kbp 352
Scaffold N50 21
Scaffold L50 (Mbp) 0.48
# of gaps 759
% of scaffold length in gaps 3.2%
Three largest Scaffolds (Mbp) 2.94, 1.59, 1.19


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 38827 38127 98.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1737 1492
transcript 1439 1227
exon 263 160
intron 69 58
description:
protein length (aa) 405 332
exons per gene 5.47 4
# of gene models 14320


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.