Due to the emerging COVID-19 pandemic, JGI will not be accepting or processing any samples because of reduced onsite staffing until further notice.
Info • Diaporthe ampelina UCDDA912


This genome was sequenced by Abraham Morales-Cruz, Dario Cantu et al in the Department of Viticulture and Enology, University of California Davis
Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens.

Summary statistics for the Diaporthe ampelina UCDDA912 release are below.
Genome Assembly
Genome Assembly size (Mbp) 47.33
Sequencing read coverage depth 50x
# of contigs 2872
# of scaffolds 2383
# of scaffolds >= 2Kbp 777
Scaffold N50 103
Scaffold L50 (Mbp) 0.13
# of gaps 489
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.87, 0.54, 0.43

Gene Models ExternalModels
length (bp) of: average median
gene 1536 1303
transcript 1327 1125
exon 477 270
intron 119 78
protein length (aa) 442 375
exons per gene 2.78 2
# of gene models 10704

Genome Reference(s)


This project was not sequenced at the JGI.