Due to the emerging COVID-19 pandemic, JGI will not be accepting or processing any samples because of reduced onsite staffing until further notice.
Info • Diplodia seriata DS831

Status

This genome was sequenced by Abraham Morales-Cruz, Dario Cantu et al in the Department of Viticulture and Enology, University of California Davis
Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens.

 

Summary statistics for the Diplodia seriata DS831 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.12
Sequencing read coverage depth 78.93x
# of contigs 1217
# of scaffolds 694
# of scaffolds >= 2Kbp 323
Scaffold N50 39
Scaffold L50 (Mbp) 0.30
# of gaps 523
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 0.98, 0.88, 0.70


Gene Models ExternalModels
length (bp) of: average median
gene 1574 1346
transcript 1321 1128
exon 426 242
intron 122 63
description:
protein length (aa) 440 376
exons per gene 3.10 3
# of gene models 9343


Genome Reference(s)

Funding

This project was not sequenced at the JGI.