Info • Dissoconium aciculare v1.0

Status

[August 2013] The Dissoconium aciculare genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R44849 (Gnerre et al., 2010).
A 39.3 Kb mitochondrial genome was assembled separately and is available in the download section.

Summary statistics for the Dissoconium aciculare CBS 342.82 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 26.54
Sequencing read coverage depth 97.7x
# of contigs 232
# of scaffolds 54
# of scaffolds >= 2Kbp 48
Scaffold N50 6
Scaffold L50 (Mbp) 1.78
# of gaps 178
% of scaffold length in gaps 0.8%
Three largest Scaffolds (Mbp) 2.98, 2.75, 2.52


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 26813 23200 86.5%


Gene Models FilteredModels2
length (bp) of: average median
gene 1646 1382
transcript 1530 1267
exon 706 432
intron 102 66
description:
protein length (aa) 438 349
exons per gene 2.17 2
# of gene models 10299


Collaborators

Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.