Info • Elaphomyces granulatus Maridalen v1.0

Status

[April 2023] The Elaphomyces granulatus v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available in the Download tab.

Genome Assembly
Genome Assembly size (Mbp) 79.19
Sequencing read coverage depth 64.07x
# of contigs 52
# of scaffolds 52
# of scaffolds >= 2Kbp 52
Scaffold N50 11
Scaffold L50 (Mbp) 2.74
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.52, 4.95, 4.78


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 107379 92768 86.4%
Ests est.fasta 213374727 211024214 98.9%


Gene Models FilteredModels2
length (bp) of: average median
gene 1653 1309
transcript 1412 1083
exon 452 260
intron 116 66
description:
protein length (aa) 433 321
exons per gene 3.12 3
# of gene models 15291


Collaborators

  • Petr Baldrian, Institute of Microbiology of the Czech Academy of Sciences, Czech Republic

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.