Info • Epicoccum nigrum cont 1108929 v1.0


[June 2019] The Epicoccum nigrum cont 1108929 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Epicoccum nigrum cont 1108929 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.61
Sequencing read coverage depth 107.86x
# of contigs 26
# of scaffolds 26
# of scaffolds >= 2Kbp 26
Scaffold N50 8
Scaffold L50 (Mbp) 1.39
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.76, 2.03, 1.96

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 43253 39533 91.4%
Ests est.fasta 90144108 89489452 99.3%

Gene Models FilteredModels1
length (bp) of: average median
gene 1817 1603
transcript 1695 1491
exon 651 420
intron 78 55
protein length (aa) 477 403
exons per gene 2.61 2
# of gene models 12218


Petr Baldrian, Institute of Microbiology of the CAS, Czech Republic

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.