Info • Exophiala viscosa JF 03-3F Goopy CBS 148801 v1.0

Status

[July 2018] The JF 03-3F Goopy genome was sequenced with Illumina, assembled with AllpathsLG, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available in Download.

Genome Assembly
Genome Assembly size (Mbp) 28.29
Sequencing read coverage depth 147.3x
# of contigs 35
# of scaffolds 30
# of scaffolds >= 2Kbp 25
Scaffold N50 4
Scaffold L50 (Mbp) 2.24
# of gaps 5
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.39, 4.56, 2.49


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 34169 32091 93.9%
Ests est.fasta 146597803 140897203 96.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1840 1666
transcript 1740 1564
exon 705 410
intron 70 56
description:
protein length (aa) 488 428
exons per gene 2.47 2
# of gene models 11344


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Carr Erin C, Barton Quin, Grambo Sarah, Sullivan Mitchell, Renfro Cecile M, Kuo Alan, Pangilinan Jasmyn, Lipzen Anna, Keymanesh Keykhosrow, Savage Emily, Barry Kerrie, Grigoriev Igor V, Riekhof Wayne R, Harris Steven D
Characterization of a novel polyextremotolerant fungus, <i>Exophiala viscosa</i>, with insights into its melanin regulation and ecological niche
academic.oup.com

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.