Status
[July 2018] The JF 03-3F Goopy genome was sequenced with Illumina, assembled with AllpathsLG, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available in Download.
Genome Assembly | |
Genome Assembly size (Mbp) | 28.29 |
Sequencing read coverage depth | 147.3x |
# of contigs | 35 |
# of scaffolds | 30 |
# of scaffolds >= 2Kbp | 25 |
Scaffold N50 | 4 |
Scaffold L50 (Mbp) | 2.24 |
# of gaps | 5 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 5.39, 4.56, 2.49 |
ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
EstClusters | ESTclusters | 34169 | 32091 | 93.9% |
Ests | est.fasta | 146597803 | 140897203 | 96.1% |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1840 | 1666 |
transcript | 1740 | 1564 |
exon | 705 | 410 |
intron | 70 | 56 |
description: | ||
protein length (aa) | 488 | 428 |
exons per gene | 2.47 | 2 |
# of gene models | 11344 |
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Detailed information is not yet collected for id = 'DOI:10.1093/g3journal/jkad110'
Detailed information is not yet collected for id = 'DOI:10.1093/g3journal/jkad110'
Links
- JGI 1000 Fungal Genomes Project
- JGI Eurotiomycetes PhyloGroup Portal
- JGI EcoGroup Portals: Black_yeasts
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.