Status
This genome was sequenced by Barbara Blanco-Ulate, Dario Cantu ([email protected]) et al in Department of Viticulture and Enology, University of California-Davis, Davis, California, USA (Draft Genome Sequence of the Grapevine Dieback Fungus Eutypa lata UCR-EL1) Please check their data use policies.
Summary statistics for the Eutypa lata1 UCREL v1.0 release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 54.01 |
| Sequencing read coverage depth | 100x |
| # of contigs | 2929 |
| # of scaffolds | 2334 |
| # of scaffolds >= 2Kbp | 1494 |
| Scaffold N50 | 239 |
| Scaffold L50 (Mbp) | 0.07 |
| # of gaps | 595 |
| % of scaffold length in gaps | 0.2% |
| Three largest Scaffolds (Mbp) | 0.26, 0.25, 0.25 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1532 | 1311 |
| transcript | 1296 | 1098 |
| exon | 446 | 254 |
| intron | 125 | 84 |
| description: | ||
| protein length (aa) | 432 | 366 |
| exons per gene | 2.91 | 3 |
| # of gene models | 11685 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Blanco-Ulate B, Rolshausen PE, Cantu D
Draft Genome Sequence of the Grapevine Dieback Fungus Eutypa lata UCR-EL1.
Genome Announc. 2013 May 30;1(3):. doi: 10.1128/genomeA.00228-13
Blanco-Ulate B, Rolshausen PE, Cantu D
Draft Genome Sequence of the Grapevine Dieback Fungus Eutypa lata UCR-EL1.
Genome Announc. 2013 May 30;1(3):. doi: 10.1128/genomeA.00228-13
Funding
This project was not sequenced at the JGI.
