Status
[December 2022] The Extremus antarcticus MNA-CCFEE 451 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 33.29 |
| Sequencing read coverage depth | 202.0x |
| # of contigs | 371 |
| # of scaffolds | 352 |
| # of scaffolds >= 2Kbp | 285 |
| Scaffold N50 | 16 |
| Scaffold L50 (Mbp) | 0.68 |
| # of gaps | 19 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.40, 1.34, 1.31 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 40106 | 39270 | 97.9% |
| Ests | est.fasta | 154707513 | 151231735 | 97.8% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1757 | 1517 |
| transcript | 1630 | 1408 |
| exon | 634 | 378 |
| intron | 83 | 59 |
| description: | ||
| protein length (aa) | 451 | 367 |
| exons per gene | 2.57 | 2 |
| # of gene models | 13615 |
Collaborators
- Laura Selbmann, Tuscia University, Italy
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Dothideomycetes Dothideomycetidae
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
