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Info • Fennellomyces linderi CBS 158.54 v1.0

Status

[April 2020] The Fennellomyces linderi CBS 158.54 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fennellomyces linderi CBS 158.54 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 45.94
Sequencing read coverage depth 297.21x
# of contigs 34
# of scaffolds 34
# of scaffolds >= 2Kbp 34
Scaffold N50 5
Scaffold L50 (Mbp) 3.56
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.77, 4.73, 4.51


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 46735 45188 96.7%
Ests est.fasta 106074770 105706143 99.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1717 1518
transcript 1450 1264
exon 297 179
intron 71 60
description:
protein length (aa) 422 354
exons per gene 4.89 4
# of gene models 12952


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.