Info • Fibulobasidium inconspicuum Phaff89-39 v1.0

Status

[Dec 2015] The Fibulobasidium inconspicuum Phaff89-39 genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2011)
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fibulobasidium inconspicuum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 20.29
Sequencing read coverage depth 91.6x
# of contigs 169
# of scaffolds 31
# of scaffolds >= 2Kbp 31
Scaffold N50 7
Scaffold L50 (Mbp) 1.21
# of gaps 138
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 1.80, 1.73, 1.71


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 22516 22362 99.3%
Ests est.fasta 124907350 117917229 94.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 2034 1767
transcript 1644 1370
exon 270 164
intron 79 67
description:
protein length (aa) 480 390
exons per gene 6.10 5
# of gene models 8148


Collaborators

Jon Magnuson at the Pacific Northwest National Laboratory
Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.