Info • Rhodofomes roseus CIRM-BRFM 1785 v1.0

Status

[November 2017] The Rhodofomes roseus CIRM-BRFM 1785 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Rhodofomes roseus CIRM-BRFM 1785 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.37
Sequencing read coverage depth 174.48x
# of contigs 80
# of scaffolds 80
# of scaffolds >= 2Kbp 79
Scaffold N50 11
Scaffold L50 (Mbp) 1.14
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.45, 2.44, 2.15


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 70263 64891 92.4%
Ests est.fasta 99768657 99015784 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1917 1668
transcript 1573 1358
exon 259 159
intron 70 57
description:
protein length (aa) 450 369
exons per gene 6.07 5
# of gene models 12986


Collaborators

Eric Record and Marie-Noëlle Rosso, Aix Marseille Université

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Hage H, Miyauchi S, Virágh M, Drula E, Min B, Chaduli D, Navarro D, Favel A, Norest M, Lesage-Meessen L, Bálint B, Merényi Z, de Eugenio L, Morin E, Martínez AT, Baldrian P, Štursová M, Martínez MJ, Novotny C, Magnuson JK, Spatafora JW, Maurice S, Pangilinan J, Andreopoulos W, LaButti K, Hundley H, Na H, Kuo A, Barry K, Lipzen A, Henrissat B, Riley R, Ahrendt S, Nagy LG, Grigoriev IV, Martin F, Rosso MN
Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay.
Environ Microbiol. 2021 Oct;23(10):5716-5732. doi: 10.1111/1462-2920.15423

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.