Info • Fusarium oxysporum NRRL 26365

Status

[May 2020] The genome of Fusarium oxysporum NRRL 26365 was provided to JGI by Li-Jun Ma. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. The JGI Fungal Annotation Pipeline was used to predict gene models and provide functional annotation.

Summary statistics for the Fusarium oxysporum NRRL 26365 release are below.
Genome Assembly
Genome Assembly size (Mbp) 48.46
Sequencing read coverage depth
# of contigs 280
# of scaffolds 280
# of scaffolds >= 2Kbp 247
Scaffold N50 21
Scaffold L50 (Mbp) 0.70
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.76, 1.79, 1.77


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 47130 39748 84.3%
Ests est.fasta 190612210 180557069 94.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1768 1524
transcript 1601 1386
exon 518 309
intron 82 56
description:
protein length (aa) 480 404
exons per gene 3.09 3
# of gene models 16047


Collaborators

  • Li-Jun Ma, University of Massachusetts Amherst, USA

Funding

This project was not sequenced at the JGI.