Status
[September 2020] The Fusarium oxysporum f. sp. albedinis isolate 9 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
Summary statistics for the Fusarium oxysporum f. sp.
albedinis isolate 9 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 65.56 |
| Sequencing read coverage depth | 93.9x |
| # of contigs | 114 |
| # of scaffolds | 114 |
| # of scaffolds >= 2Kbp | 111 |
| Scaffold N50 | 9 |
| Scaffold L50 (Mbp) | 2.95 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 5.56, 5.13, 4.98 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 54130 | 48028 | 88.7% |
| Ests | est.fasta | 252581677 | 250925888 | 99.3% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1742 | 1508 |
| transcript | 1570 | 1367 |
| exon | 530 | 325 |
| intron | 90 | 57 |
| description: | ||
| protein length (aa) | 458 | 382 |
| exons per gene | 2.96 | 2 |
| # of gene models | 19411 |
Collaborators
- Jeffrey Coleman, Auburn University, USA
- Adil Essarioui, INRA-Morocco
- Li-Jun Ma, University of Massachusetts Amherst, USA
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Khoulassa S, Elmoualij B, Benlyas M, Meziani R, Bouhlali EDT, Houria B, Alaoui YEH, Haridas S, Guo J, Lipzen A, Hurtado CV, Tejomurthula S, Barry K, Grigoriev IV, Coleman JJ, Ayhan DH, Ma LJ, Essarioui A
High-Quality Draft Nuclear and Mitochondrial Genome Sequence of Fusarium oxysporum f. sp. albedinis strain 9, the Causal Agent of Bayoud Disease on Date Palm.
Plant Dis. 2022 May 10;():PDIS01220245A. doi: 10.1094/PDIS-01-22-0245-A
Khoulassa S, Elmoualij B, Benlyas M, Meziani R, Bouhlali EDT, Houria B, Alaoui YEH, Haridas S, Guo J, Lipzen A, Hurtado CV, Tejomurthula S, Barry K, Grigoriev IV, Coleman JJ, Ayhan DH, Ma LJ, Essarioui A
High-Quality Draft Nuclear and Mitochondrial Genome Sequence of Fusarium oxysporum f. sp. albedinis strain 9, the Causal Agent of Bayoud Disease on Date Palm.
Plant Dis. 2022 May 10;():PDIS01220245A. doi: 10.1094/PDIS-01-22-0245-A
Links
- JGI EcoGroup Portals: Plant Pathogens
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales Nectriaceae Fusarium
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
