Info • Fusarium oxysporum f. sp. pisi HDV247


The genome sequence and gene predictions of Fusarium oxysporum f. sp. pisi HDV247 have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Oct 1, 2019. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Fusarium oxysporum f. sp. pisi HDV247 release are below.
Genome Assembly
Genome Assembly size (Mbp) 55.19
Sequencing read coverage depth 242x
# of contigs 1744
# of scaffolds 472
# of scaffolds >= 2Kbp 435
Scaffold N50 7
Scaffold L50 (Mbp) 2.84
# of gaps 1272
% of scaffold length in gaps 1.2%
Three largest Scaffolds (Mbp) 5.90, 4.50, 4.45

Gene Models ExternalModels
length (bp) of: average median
gene 2332 1959
transcript 2174 1803
exon 720 427
intron 81 56
protein length (aa) 457 387
exons per gene 3.02 3
# of gene models 26378


Li-Jun Ma, University of Massachusetts Amherst, USA

Genome Reference(s)


This project was not sequenced at the JGI.