Info • Gaertneriomyces semiglobifer Barr 43 v1.0

Status

[October 2016] The Gaertneriomyces semiglobifer Barr 43 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Gaertneriomyces semiglobifer Barr 43 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 20.92
Sequencing read coverage depth 435.78x
# of contigs 77
# of scaffolds 77
# of scaffolds >= 2Kbp 76
Scaffold N50 9
Scaffold L50 (Mbp) 0.58
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.96, 1.37, 1.35


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 32138 27703 86.2%
Ests est.fasta 142181296 134242825 94.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1775 1470
transcript 1573 1277
exon 422 223
intron 76 66
description:
protein length (aa) 453 352
exons per gene 3.73 3
# of gene models 8714


Collaborators

Tim James, University of Michigan, USA

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Amses KR, Simmons DR, Longcore JE, Mondo SJ, Seto K, Jerônimo GH, Bonds AE, Quandt CA, Davis WJ, Chang Y, Federici BA, Kuo A, LaButti K, Pangilinan J, Andreopoulos W, Tritt A, Riley R, Hundley H, Johnson J, Lipzen A, Barry K, Lang BF, Cuomo CA, Buchler NE, Grigoriev IV, Spatafora JW, Stajich JE, James TY
Diploid-dominant life cycles characterize the early evolution of Fungi.
Proc Natl Acad Sci U S A. 2022 Sep 6;119(36):e2116841119. doi: 10.1073/pnas.2116841119

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.