Info • Geopyxis carbonaria CBS 144460 v1.0

Status

[July 2018] The Geopyxis carbonaria CBS 144460 (DOB1671) genome was sequenced using PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Geopyxis carbonaria CBS 144460 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 49.45
Sequencing read coverage depth 289.93x
# of contigs 116
# of scaffolds 116
# of scaffolds >= 2Kbp 115
Scaffold N50 21
Scaffold L50 (Mbp) 0.92
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.50, 1.48, 1.40


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 57285 53041 92.6%
Ests est.fasta 172218553 169325751 98.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1659 1395
transcript 1507 1257
exon 521 325
intron 82 58
description:
protein length (aa) 431 342
exons per gene 2.90 2
# of gene models 11663


Collaborators

  • Tom Bruns at University of California Berkeley

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Steindorff AS, Seong K, Carver A, Calhoun S, Fischer MS, Stillman K, Liu H, Drula E, Henrissat B, Simpson HJ, Schilling JS, Lipzen A, He G, Yan M, Andreopoulos B, Pangilinan J, LaButti K, Ng V, Traxler M, Bruns TD, Grigoriev IV
Diversity of genomic adaptations to post-fire environment in Pezizales fungi points to a crosstalk between charcoal tolerance and sexual development.
New Phytol. 2022 Jul 27;():. doi: 10.1111/nph.18407

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.