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Info • Gloniopsis sp. FL0384 v1.0

Status

[August 2018] The Gloniopsis sp. FL0384 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Gloniopsis sp. FL0384 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.84
Sequencing read coverage depth 166.482042273x
# of contigs 77
# of scaffolds 71
# of scaffolds >= 2Kbp 69
Scaffold N50 14
Scaffold L50 (Mbp) 0.96
# of gaps 6
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.02, 1.71, 1.60


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42206 42079 99.7%
Ests est.fasta 128265231 120726616 94.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1838 1621
transcript 1674 1467
exon 541 336
intron 80 58
description:
protein length (aa) 473 396
exons per gene 3.10 3
# of gene models 12423


Collaborators

Jana U'Ren, University of Arizona, AZ

Betsy Arnold, University of Arizona, AZ

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.