Info • Globomyces pollinis-pini Arg68 v1.0

Status

[August 2016] The Globomyces pollinis-pini Arg68 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Globomyces pollinis-pini Arg68 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 21.65
Sequencing read coverage depth 163x
# of contigs 1402
# of scaffolds 1155
# of scaffolds >= 2Kbp 983
Scaffold N50 125
Scaffold L50 (Mbp) 0.05
# of gaps 247
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 0.27, 0.21, 0.20


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 54749 49599 90.6%
Ests est.fasta 126827398 121644646 95.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1467 1218
transcript 1324 1096
exon 287 177
intron 42 31
description:
protein length (aa) 393 311
exons per gene 4.61 3
# of gene models 11537


Collaborators

Tim James, University of Michigan, USA

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.