Status
Assembly v1 (June 2015) is a standard draft assembly of Illumina gDNA reads. A total of 271 scaffolds and 45.0 Mbp were assembled with AllPathsLG.
Annotation v1 (April 2016) is a standard draft annotation using RNA-Seq, contigs assembled thereof by Trinity, and the JGI Annotation Pipeline.
Summary statistics for the Gyromitra esculenta CBS101906
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 45.05 |
| Sequencing read coverage depth | 83.6x |
| # of contigs | 774 |
| # of scaffolds | 271 |
| # of scaffolds >= 2Kbp | 243 |
| Scaffold N50 | 27 |
| Scaffold L50 (Mbp) | 0.54 |
| # of gaps | 503 |
| % of scaffold length in gaps | 1.5% |
| Three largest Scaffolds (Mbp) | 1.69, 1.41, 1.34 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 54003 | 52558 | 97.3% |
| Ests | est.fasta | 133369492 | 117558673 | 88.1% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1698 | 1428 |
| transcript | 1488 | 1227 |
| exon | 420 | 262 |
| intron | 84 | 67 |
| description: | ||
| protein length (aa) | 425 | 331 |
| exons per gene | 3.54 | 3 |
| # of gene models | 11202 |
Collaborators
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
