Info • Helicostylum pulchrum RSA 2064 v1.0

Status

The Helicostylum pulchrum RSA 2064 genome was sequenced with Sequel, assembled with Falcon version 1.8.8, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Helicostylum pulchrum RSA 2064 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.73
Sequencing read coverage depth 196.84x
# of contigs 233
# of scaffolds 233
# of scaffolds >= 2Kbp 232
Scaffold N50 23
Scaffold L50 (Mbp) 0.45
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.17, 1.05, 1.03


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 56122 48890 87.1%
Ests est.fasta 229945530 224691005 97.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1625 1393
transcript 1377 1163
exon 338 199
intron 83 67
description:
protein length (aa) 399 320
exons per gene 4.07 3
# of gene models 12794


Collaborators

Joseph Spatafora, Oregon State University, OR, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Chang Y, Wang Y, Mondo S, Ahrendt S, Andreopoulos W, Barry K, Beard J, Benny GL, Blankenship S, Bonito G, Cuomo C, Desiro A, Gervers KA, Hundley H, Kuo A, LaButti K, Lang BF, Lipzen A, O'Donnell K, Pangilinan J, Reynolds N, Sandor L, Smith ME, Tsang A, Grigoriev IV, Stajich JE, Spatafora JW
Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies.
iScience. 2022 Aug 19;25(8):104840. doi: 10.1016/j.isci.2022.104840

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.