Info • Herpotrichiellaceae sp. JF2 05-7F Lumpy v1.0


[January 2021] The Herpotrichiellaceae sp. JF2 05-7F v1.0 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available in the Download tab.

Summary statistics for the Herpotrichiellaceae sp. JF2 05-7F v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 29.53
Sequencing read coverage depth 142.9x
# of contigs 160
# of scaffolds 139
# of scaffolds >= 2Kbp 124
Scaffold N50 16
Scaffold L50 (Mbp) 0.54
# of gaps 21
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.55, 1.46, 1.35

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 34420 33260 96.6%
Ests est.fasta 121057053 119479757 98.7%

Gene Models FilteredModels1
length (bp) of: average median
gene 1869 1669
transcript 1727 1534
exon 647 386
intron 87 60
protein length (aa) 487 413
exons per gene 2.67 2
# of gene models 10928


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.