Info • Homolaphlyctis polyrhiza JEL142 v1.0


The genome sequence and gene models of Homolaphlyctis polyrhiza JEL142 were not determined by the Joint Genome Institute (JGI), but were provided by the Stajich lab in June, 2016. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by the Stajich lab and is therefore not automatically updated.

Please contact the Stajich lab for permission to use this genome in your research.

Summary statistics for the Homoloaphlyctis polyrhiza JEL142 release are below.
Genome Assembly
Genome Assembly size (Mbp) 21.32
Sequencing read coverage depth NA
# of contigs 3928
# of scaffolds 3517
# of scaffolds >= 2Kbp 2146
Scaffold N50 577
Scaffold L50 (Mbp) 0.01
# of gaps 411
% of scaffold length in gaps 13.7%
Three largest Scaffolds (Mbp) 0.11, 0.07, 0.06

Gene Models ExternalModels
length (bp) of: average median
gene 1606 1268
transcript 1149 906
exon 279 173
intron 148 106
protein length (aa) 383 302
exons per gene 4.13 3
# of gene models 7123


Jason Stajich, University of California, Riverside

Genome Reference(s)


This project was not sequenced at the JGI.