Info • Trichocladium griseum var. thermoidea UFV


The genome sequence and gene models of Trichocladium griseum (Humicola grisea var. thermoidae) were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Aug 05, 2021 and annotation provided by the authors. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds, and 5) unsupported short models. This resulted in the removal of 637 models from T. griseum and the generation of the FilteredModels1 gene track. All published models are available in the ExternalModels track. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Genome Assembly
Genome Assembly size (Mbp) 28.75
Sequencing read coverage depth 100x
# of contigs 83
# of scaffolds 33
# of scaffolds >= 2Kbp 33
Scaffold N50 6
Scaffold L50 (Mbp) 1.80
# of gaps 50
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 3.95, 2.64, 2.57

Gene Models FilteredModels1
length (bp) of: average median
gene 2277 1749
transcript 2079 1587
exon 723 377
intron 108 71
protein length (aa) 549 451
exons per gene 2.87 2
# of gene models 8099

Genome Reference(s)


This project was not sequenced at the JGI.