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Info • Hypoxylon sp. EC38 v3.0

Status

Assembly v2 (April 2013) is an assembly of Solexa gDNA reads using AllPathsLG improved by PacBio reads using PBJelly.

Summary statistics for the Hypoxylon sp. EC38 v3.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 47.72
Sequencing read coverage depth 116.1x
# of contigs 582
# of scaffolds 288
# of scaffolds >= 2Kbp 225
Scaffold N50 16
Scaffold L50 (Mbp) 0.99
# of gaps 294
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 3.25, 2.46, 1.96


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other Rnnotator_contigs 38317 35866 93.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1793 1535
transcript 1580 1377
exon 539 324
intron 112 64
description:
protein length (aa) 458 381
exons per gene 2.93 2
# of gene models 12534


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.