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Info • Hyphopichia burtonii NRRL Y-1933 v1.0

Status

This draft release was produced using Illumina data and the AllPathsLG (R38445) assembler. The genome was annotated using the JGI annotation pipeline and custom analyses.

Summary statistics for the Hyphopichia burtonii v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 12.40
Sequencing read coverage depth 50.4
# of contigs 105
# of scaffolds 27
# of scaffolds >= 2Kbp 16
Scaffold N50 3
Scaffold L50 (Mbp) 1.85
# of gaps 78
% of scaffold length in gaps 0.4%
Three largest Scaffolds (Mbp) 2.73, 1.98, 1.85


ESTs Data set # sequences total # mapped to genome % mapped to genome
RNAseq contigs RNAseq contigs 10544 10192 96.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1562 1298
transcript 1521 1277
exon 1245 1038
intron 190 83
description:
protein length (aa) 470 388
exons per gene 1.22 1
# of gene models 6002


Collaborators

  • Thomas Jeffries, University of Wisconsin
  • Igor Grigoriev, DOE Joint Genome Institute



Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.