Join us for PhycoCosm and MycoCosm webinars on March 9 and 11, 2021!
Info • Hysterangium stoloniferum HS.BST v1.0

Status

[October 2018] The Hysterangium stoloniferum HS.BST genome was sequenced with PacBio, assembled with Celera, and annotated with the JGI Annotation Pipeline.

The mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Hysterangium stoloniferum HS.BST v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 111.84
Sequencing read coverage depth 20X error-corrected PacBio reads
# of contigs 652
# of scaffolds 652
# of scaffolds >= 2Kbp 649
Scaffold N50 54
Scaffold L50 (Mbp) 0.56
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.44, 2.01, 2.01


Gene Models FilteredModels1
length (bp) of: average median
gene 1593 1308
transcript 1200 951
exon 189 122
intron 75 58
description:
protein length (aa) 400 317
exons per gene 6.35 5
# of gene models 15017


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.