Info • Kockovaella imperatae NRRL Y-17943 v1.0

Status

[September 2016] The Kockovaella imperatae NRRL Y-17943 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Kockovaella imperatae v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 17.47
Sequencing read coverage depth 428.26x
# of contigs 38
# of scaffolds 38
# of scaffolds >= 2Kbp 34
Scaffold N50 6
Scaffold L50 (Mbp) 1.07
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.01, 1.92, 1.53


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 33560 31260 93.1%
Ests est.fasta 146021190 140640861 96.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1963 1699
transcript 1674 1428
exon 267 156
intron 57 51
description:
protein length (aa) 494 413
exons per gene 6.28 5
# of gene models 7393


Collaborators

Jon Magnuson at the Pacific Northwest National Laboratory

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Mondo SJ, Dannebaum RO, Kuo RC, Louie KB, Bewick AJ, LaButti K, Haridas S, Kuo A, Salamov A, Ahrendt SR, Lau R, Bowen BP, Lipzen A, Sullivan W, Andreopoulos BB, Clum A, Lindquist E, Daum C, Northen TR, Kunde-Ramamoorthy G, Schmitz RJ, Gryganskyi A, Culley D, Magnuson J, James TY, O'Malley MA, Stajich JE, Spatafora JW, Visel A, Grigoriev IV
Widespread adenine N6-methylation of active genes in fungi.
Nat Genet. 2017 Jun;49(6):964-968. doi: 10.1038/ng.3859

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.