Info • Leucosporidiella creatinivora UCDFST 62-1032 v1.0

Status

[Feb 2016] The Leucosporidiella scottii genome was sequenced using PacBio reads and assembled with Falcon version 0.3.0 and polished with Quiver version smrtanalysis_2.3.0.140936. Mitochondrial genome was assembled separately and is available in the downloads section.

 

Summary statistics for the Leucosporidiella scottii v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 26.33
Sequencing read coverage depth PacBio
# of contigs 177
# of scaffolds 177
# of scaffolds >= 2Kbp 170
Scaffold N50 27
Scaffold L50 (Mbp) 0.30
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.52, 0.93, 0.88


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 17928 16897 94.2%
Ests est.fasta 125516048 119030711 94.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 2043 1747
transcript 1550 1308
exon 226 143
intron 86 68
description:
protein length (aa) 462 380
exons per gene 6.85 6
# of gene models 9854


Collaborators

Jon Magnuson, Pacific Northwest National Laboratory, USA
Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.