Info • Lizonia empirigonia CBS 542.76 v1.0

Status

[June 2015] The Lizonia empirigonia genome was sequenced using the PacBio platform, assembled with Celera 8.2beta and polished with Quiver.
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lizonia empirigonia CBS 542.76 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 51.52
Sequencing read coverage depth 21.6x
# of contigs 423
# of scaffolds 423
# of scaffolds >= 2Kbp 422
Scaffold N50 21
Scaffold L50 (Mbp) 0.90
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.00, 1.74, 1.67


Gene Models GeneCatalog_2015_04_29_17_23
length (bp) of: average median
gene 1444 1197
transcript 1305 1071
exon 499 294
intron 88 55
description:
protein length (aa) 435 357
exons per gene 2.61 2
# of gene models 12467


Collaborators

Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.