Info • Lentinula novae-zelandiae ICMP 18003 v1.0

Status

The Lentinula novae-zelandiae ICMP 18003A genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were provided by Christopher Alan Smith on Jul 8, 2020. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 678 models from L. novae-zelandiae and the generation of the FilteredModels1 gene track. All provided models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by the author and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Lentinula novae-zelandiae ICMP 18003A v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 48.94
Sequencing read coverage depth 264x
# of contigs 19
# of scaffolds 17
# of scaffolds >= 2Kbp 17
Scaffold N50 4
Scaffold L50 (Mbp) 4.83
# of gaps 2
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 8.12, 7.58, 5.70


Gene Models FilteredModels1
length (bp) of: average median
gene 1685 1370
transcript 1391 1122
exon 251 150
intron 67 57
description:
protein length (aa) 464 374
exons per gene 5.55 4
# of gene models 11421


Collaborators

Genome Reference(s)

Funding

This project was not sequenced at the JGI.