Info • Lophium mytilinum CBS 269.34 v1.0


[June 2014] The Lophium mytilinum genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R47710 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lophium mytilinum CBS 269.34 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 43.41
Sequencing read coverage depth 74.4x
# of contigs 286
# of scaffolds 49
# of scaffolds >= 2Kbp 34
Scaffold N50 9
Scaffold L50 (Mbp) 2.04
# of gaps 237
% of scaffold length in gaps 0.8%
Three largest Scaffolds (Mbp) 3.87, 2.85, 2.72

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 29619 28333 95.7%

Gene Models FilteredModels1
length (bp) of: average median
gene 1689 1452
transcript 1526 1311
exon 530 337
intron 88 58
protein length (aa) 438 361
exons per gene 2.88 2
# of gene models 15153


Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.