Info • Loramyces juncicola 46458 v1.0

Status

(Jan 2015) The Loramyces juncicola 46458 genome was sequenced using Illumina and assembled with AllPathsLG version R49403 (Gnerre et al. 2010) .

Summary statistics for the Loramyces juncicola 46458 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 42.68
Sequencing read coverage depth 86.5
# of contigs 240
# of scaffolds 58
# of scaffolds >= 2Kbp 51
Scaffold N50 9
Scaffold L50 (Mbp) 1.96
# of gaps 182
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 3.03, 2.97, 2.84


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 42936 29604 68.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1689 1441
transcript 1520 1284
exon 492 309
intron 83 56
description:
protein length (aa) 435 354
exons per gene 3.09 3
# of gene models 14372


Collaborators

Joey Spatafora, Oregon State University

Jon Magnuson, Pacific Northwest National Laboratory

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.