Status
(Jan 2015) The Loramyces juncicola 46458 genome was sequenced using Illumina and assembled with AllPathsLG version R49403 (Gnerre et al. 2010) .
Summary statistics for the Loramyces juncicola 46458 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 42.68 |
| Sequencing read coverage depth | 86.5 |
| # of contigs | 240 |
| # of scaffolds | 58 |
| # of scaffolds >= 2Kbp | 51 |
| Scaffold N50 | 9 |
| Scaffold L50 (Mbp) | 1.96 |
| # of gaps | 182 |
| % of scaffold length in gaps | 0.5% |
| Three largest Scaffolds (Mbp) | 3.03, 2.97, 2.84 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 42936 | 29604 | 68.9% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1689 | 1441 |
| transcript | 1520 | 1284 |
| exon | 492 | 309 |
| intron | 83 | 56 |
| description: | ||
| protein length (aa) | 435 | 354 |
| exons per gene | 3.09 | 3 |
| # of gene models | 14372 |
Collaborators
Joey Spatafora, Oregon State University
Jon Magnuson, Pacific Northwest National Laboratory
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
