Info • Macroventuria anomochaeta CBS 525.71 v1.0

Status

[May 2014] The Macroventuria anomochaeta genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R47710 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Macroventuria anomochaeta CBS 525.71 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.34
Sequencing read coverage depth 116.6x
# of contigs 346
# of scaffolds 75
# of scaffolds >= 2Kbp 73
Scaffold N50 16
Scaffold L50 (Mbp) 0.66
# of gaps 271
% of scaffold length in gaps 1.1%
Three largest Scaffolds (Mbp) 2.24, 1.71, 1.65


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 28377 26211 92.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1622 1375
transcript 1492 1250
exon 599 377
intron 89 55
description:
protein length (aa) 427 348
exons per gene 2.49 2
# of gene models 12954


Collaborators

Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.